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The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrin alpha-IIb beta-3 Recognition
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 2 mM 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-1 90% H2O/10% D2O 0.0 6.0 ambient 300 2 2D 1H-1H TOCSY 2 mM 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-1 90% H2O/10% D2O 0.0 6.0 ambient 300 3 2D 1H-1H NOESY 2 mM 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-2 100% D2O 0.0 6.0 ambient 300 4 2D 1H-1H TOCSY 2 mM 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-2 100% D2O 0.0 6.0 ambient 300 5 3D 1H-15N NOESY 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-3 90% H2O/10% D2O 0.0 6.0 ambient 300 6 3D 1H-15N TOCSY 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-3 90% H2O/10% D2O 0.0 6.0 ambient 300 7 3D HNHA 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-3 90% H2O/10% D2O 0.0 6.0 ambient 300 8 2D 1H-15N HSQC 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-3 90% H2O/10% D2O 0.0 6.0 ambient 300 9 2D 1H-15N HSQC 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NPWNG mutant-4 100% D2O 0.0 6.0 ambient 300
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6 Bruker Biospin 2 data analysis AURELIA 3.1.7 Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer 3 refinement X-PLOR 3.185 Brunger