2M7F
The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Integrins Recognitions
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 2 mM 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-1 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
2 | 2D 1H-1H TOCSY | 2 mM 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-1 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
3 | 2D 1H-1H NOESY | 2 mM 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-2 | 100% D2O | 0 | 6.0 | ambient | 300 | |
4 | 2D 1H-1H TOCSY | 2 mM 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-2 | 100% D2O | 0 | 6.0 | ambient | 300 | |
5 | 3D 1H-15N NOESY | 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-3 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
6 | 3D 1H-15N TOCSY | 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-3 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
7 | 3D HNHA | 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-3 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
8 | 2D 1H-15N HSQC | 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-3 | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
9 | 2D 1H-15N HSQC | 2 mM [U-15N] 2mM Rhodostomin 48ARGDWN-67NGLYG mutant-4 | 100% D2O | 0 | 6.0 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 600 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | xwinnmr |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | xwinnmr | 2.6 | Bruker Biospin |
2 | data analysis | AURELIA | 3.1.7 | Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer |
3 | refinement | X-PLOR | 3.185 | Brunger |