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NMR structures of human apoptotic protein tBid in LPPG micelle
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 2 3D HNCA 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 3 3D HNCO 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 4 3D HNCACB 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 5 3D CBCA(CO)NH 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 6 3D HBHA(CO)NH 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 7 3D 1H-15N NOESY 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 8 4D HCHC-NOESY 1.0 mM [U-100% 13C; U-100% 15N] tBid in LPPG micelle 100% D2O 0.1 6.6 ambient 318 9 T1 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318 10 T2 0.5 mM [U-15N] tBid in LPPG micelle, 0.8 mM [U-13C; U-15N] tBid in LPPG micelle, 0.8 mM [U-100% 15N; U-80% 2H] tBid in LPPG micelle 90% H2O/10% D2O 0.1 6.6 ambient 318
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600 3 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing, molecular dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis PIPP Garrett 3 data analysis NMRView Johnson, One Moon Scientific 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore