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Structure, phosphorylation and U2AF65 binding of the Nterminal Domain of splicing factor 1 during 3 splice site Recognition
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 2 2D 1H-13C HSQC 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 3 2D 1H-1H NOESY 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 4 3D CBCA(CO)NH 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 5 3D HNCA 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 6 3D HNCACB 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 7 3D HCCH-TOCSY 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 8 3D 1H-15N NOESY 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 9 3D 1H-13C NOESY aliphatic 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298 10 3D 1H-13C NOESY aromatic 100-600 uM [U-15N] protein, 100-600 uM [U-13C; U-15N] entity, 100-600 uM [U-13C; U-15N; U-2H] entity 90% H2O/10% D2O 70 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 750 3 Bruker AVANCE 600 4 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution ARIA 2.1 Linge, O'Donoghue and Nilges 2 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 chemical shift assignment Sparky Goddard 5 collection TopSpin Bruker Biospin 6 processing TopSpin Bruker Biospin 7 refinement ARIA 2.1 Linge, O'Donoghue and Nilges 8 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich