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Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.8 mM 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 100 mM potassium chloride, 5 mM potassium phosphate, 10 % D2O, 90 % H2O 90% H2O/10% D2O 0.105 6.8 ambient 298 2 2D 1H-1H NOESY 0.8 mM 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 100 mM potassium chloride, 5 mM potassium phosphate, 10 % D2O, 90 % H2O 90% H2O/10% D2O 0.105 6.8 ambient 298 3 2D 1H-1H TOCSY 0.8-6.0 mM 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 0.8 mM [U-13C; U-15N] 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 100 mM potassium chloride, 5 mM potassium phosphate, 90 % D2O 90% H2O/10% D2O 0.105 6.8 ambient 298 4 1H-15N JRHMQC 0.8 mM 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 100 mM potassium chloride, 5 mM potassium phosphate, 10 % D2O, 90 % H2O 90% H2O/10% D2O 0.105 6.8 ambient 298 5 1H-15N HMBC 0.8 mM 5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP *T)-3', 100 mM potassium chloride, 5 mM potassium phosphate, 10 % D2O, 90 % H2O 90% H2O/10% D2O 0.105 6.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, molecular dynamics, matrix relaxation X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 12 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR 3.851 BRUNGER, SCHWIETERS, KUSZEWSKI, TJ