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Solution structure of the Get5 ubiquitin-like domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 2 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 3 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 4 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 5 3D 1H-15N TOCSY 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 6 2D 1H-13C HSQC aliphatic 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5 7 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide 90% H2O/10% D2O 100 6.1 ambient 297.5
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing REFINED IN EXPLICIT WATER VnmrJ
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection VnmrJ Varian 2 chemical shift assignment Analysis CCPN 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis TALOS+ Cornilescu, Delaglio and Bax 5 structure solution ARIA 2.3 Linge, O'Donoghue and Nilges 6 refinement ARIA 2.3 Linge, O'Donoghue and Nilges