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NMR Structure of the Self-Complementary 10 mer DNA Oligonucleotide 5'-GGATATATCC-3'.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3') 100% D2O 7 ambient 278 2 2D 1H-1H NOESY 0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3') 90% H2O/10% D2O 7 ambient 278 3 2D DQF-COSY 0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3') 100% D2O 7 ambient 278 4 2D 1H-1H NOESY 1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage 100% D2O 7 ambient 278 5 2D 1H-13C HSQC aliphatic 1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage 100% D2O 7 ambient 278 6 2D 1H-13C HSQC aromatic 1.2 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 11 mg/mL Pf1 phage 100% D2O 7 ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing, molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 5000 Conformers Submitted Total Number 11 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman 2 refinement Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman