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Solution structure of the Brazil Nut 2S albumin Ber e 1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide 90% H2O/10% D2O 0.02 5.8 ambient 303 2 3D 1H-15N NOESY 1 mM [U-13C; U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide 90% H2O/10% D2O 0.02 5.8 ambient 303 3 3D 1H-13C NOESY 1 mM [U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide 90% H2O/10% D2O 0.02 5.8 ambient 303 4 3D HNHA 1 mM [U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide 90% H2O/10% D2O 0.02 5.8 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker AMX 500
NMR Refinement Method Details Software simulated annealing, molecular dynamics XPLOR-NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 300 Conformers Submitted Total Number 12 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore 2 geometry optimization XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore 3 structure solution XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore 4 data analysis TALOS Cornilescu, Delaglio and Bax 5 peak picking CcpNmr Analysis Vranken et.al 6 data analysis CcpNmr Analysis Vranken et.al 7 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 8 refinement Protein Constructor Zdunek, Janusz