☰ Navigation Tabs
NMR structure of Carcinoscorpius rotundicauda thioredoxin related protein 16 and its role in regulating transcription factor NF-kB activity
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 100 mM [U-100% 15N] sodium chloride, 5 mM [U-100% 15N] DTT, 1 mM [U-100% 15N] EDTA, 5 % [U-100% 15N] glycerol 95% H2O/5% D2O 100 7 ambient 298 2 3D HNCACB 100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol 95% H2O/5% D2O 100 7 ambient 298 3 3D CBCA(CO)NH 100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol 95% H2O/5% D2O 100 7 ambient 298 4 3D 1H-13C NOESY aliphatic 100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol 95% H2O/5% D2O 100 7 ambient 298 5 3D HCCH-TOCSY 100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol 95% H2O/5% D2O 100 7 ambient 298 6 2D 1H-15N HSQC 100 mM [U-100% 15N] sodium chloride, 5 mM [U-100% 15N] DTT, 1 mM [U-100% 15N] EDTA, 8 mg/mL [U-100% 15N] Pf1 phage 95% H2O/5% D2O 100 7 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis Sparky Goddard 3 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 4 collection TopSpin Bruker Biospin 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore