2LSX
Solution structure of a mini i-motif
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 0.5 mM Synthetic cyclic oligonucleotide, 90% H2O, 10% D2O | 90% H2O/10% D2O | 125 | 5.0 | ambient | 279 | |
2 | DQF-COSY | 0.5 mM Synthetic cyclic oligonucleotide, 90% H2O, 10% D2O | 90% H2O/10% D2O | 125 | 5.0 | ambient | 279 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 7.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |