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Structure of decorbin-binding protein A from Borrelia burgdorferi
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 2 3D HNCACB 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 3 3D CBCA(CO)NH 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 4 3D 1H-15N NOESY 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 5 3D 1H-13C NOESY aliphatic 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 6 3D HCCH-TOCSY 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O 90% H2O/10% D2O 0.05 6.5 ambient 298 7 J-modulated 15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O, 5 % polyacrylamide 90% H2O/10% D2O 0.05 6.5 ambient 298 8 JNC-modulated 15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] DBPA, 50 mM sodium phosphate, 10 % D2O, 5 % polyacrylamide 90% H2O/10% D2O 0.05 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent Inova 800 800
NMR Refinement Method Details Software torsion angle dynamics XPLOR-NIH refinement with RDCs NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRView Johnson, One Moon Scientific 3 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore