2LOL
NMR structure of an acyl-carrier protein from Rickettsia prowazekii, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
3 | 3D CBCA(CO)NH | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
4 | 3D HNCACB | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
5 | 3D HNCO | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
6 | 3D HBHA(CO)NH | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
7 | 3D 1H-15N NOESY | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
8 | 3D 1H-13C NOESY | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
9 | 3D HNHA | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 | ||
10 | 3D HCCH-COSY | 1.7 mM [U-98% 13C; U-98% 15N] acyl carrier protein | 90% H2O/10% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | CCPNMR | CCPN | |
4 | chemical shift assignment | CCPNMR | CCPN | |
5 | peak picking | CCPNMR | CCPN | |
6 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |