2LNY
ShB peptide structure bound to negatively charged lipid-bilayer after Molecular Dynamics refinement
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 13C-13C PARISxy | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
2 | 13c-13C PDSD | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
3 | SPECIFIC-NCA | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
4 | SPECIFIC-NCO | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
5 | CHHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
6 | NHHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
7 | HHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, molecular dynamics | GROMOS |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 1 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | GROMOS | 53a6 | van Gunsteren and Berendsen |
2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Rea |