2LN3
Solution NMR Structure of DE NOVO DESIGNED PROTEIN, IF3-like fold, Northeast Structural Genomics Consortium Target OR135 (CASD target)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
3 | 3D HNCO | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
4 | 3D CBCA(CO)NH | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
5 | 3D HNCACB | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
6 | 3D 1H-13C arom NOESY | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
7 | 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY | 1.04 mM [U-100% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
8 | 2D 1H-13C HSQC aliphatic | 1.14 mM [U-5% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
9 | 2D 1H-15N HSQC | 1.14 mM [U-5% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
10 | 3D HCCH-TOCSY | 1.14 mM [U-5% 13C; U-100% 15N] OR135 | 95% H2O/5% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics, distance geometry, torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | geometry optimization | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | geometry optimization | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
5 | data analysis | AutoStructure | 2.1 | Huang, Tejero, Powers and Montelione |
6 | data analysis | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
7 | chemical shift assignment | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
8 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
9 | data analysis | XEASY | Bartels et al. | |
10 | collection | TopSpin | Bruker Biospin | |
11 | collection | VnmrJ | Varian | |
12 | data analysis | Sparky | Goddard | |
13 | geometry optimization | TALOS+ | Shen, Cornilescu, Delaglio and Bax | |
14 | geometry optimization | REDCAT | Valafar, Prestegard | |
15 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
16 | refinement | AutoStructure | Huang, Tejero, Powers and Montelione | |
17 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
18 | peak picking | XEASY | Bartels et al. | |
19 | chemical shift assignment | XEASY | Bartels et al. |