2LM1
Solution NMR Structure of Lysine-specific demethylase lid from Drosophila melanogaster, Northeast Structural Genomics Consortium Target FR824D
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
2 | 3D HNCO | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
3 | 3D CBCA(CO)NH | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
4 | 3D HNCACB | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
5 | 3D HCCH-COSY | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
6 | 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
7 | 2D 1H-13C HSQC | 1.3 mM [U-5% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
8 | 2D 1H-13C HSQC aliphatic | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
9 | 2D 1H-13C HSQC aromatic | 1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS | 95% H2O/5% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, molecular dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinemen,structure solution,geometry optimization | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | refinement,geometry optimization,structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
3 | data analysis,refinement | AutoStructure | 2.1 | Huang, Tejero, Powers and Montelione |
4 | data analysis,chemical shift assignment | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
5 | processing | PROSA | Guntert | |
6 | data analysis,peak picking,chemical shift assignment | CARA | Keller and Wuthrich | |
7 | collection | VnmrJ | Varian | |
8 | geometry optimization | TALOS+ | Shen, Cornilescu, Delaglio and Bax | |
9 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
10 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |