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NMR structure of Npm1_c70
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 2 3D CBCA(CO)NH 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 3 3D HNCO 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 4 3D HNCA 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 5 3D HNCACB 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 6 3D HBHA(CO)NH 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 7 3D HN(CO)CA 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 8 3D HN(CA)CO 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 9 3D HCCH-TOCSY 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 10 2D 1H-1H NOESY 0.5 mM [U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 11 3D 1H-13C NOESY 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298 12 3D 1H-15N NOESY 0.5 mM [U-15N] protein, 20 mM sodium phosphate 90% H2O/10% D2O 20 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 700 3 Bruker AVANCE 500
NMR Refinement Method Details Software molecular dynamics, simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 400 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 chemical shift assignment CARA 2.1 Keller and Wuthrich 4 geometry optimization TALOS Cornilescu, Delaglio and Bax 5 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 6 refinement Amber 11.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm 7 validation PSVS Bhattacharya and Montelione