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Haddock model structure of the N-terminal domain dimer of HPV16 E6
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-15N HSQC
0.3 mM [U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
2
2D 1H-13C HSQC aliphatic
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
3
2D 1H-13C HSQC aromatic
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
4
3D HNCA
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
5
3D HNCACB
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
6
3D HN(CO)CA
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
7
3D HCCH-TOCSY
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
8
3D HCCH-COSY
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
9
3D 1H-15N NOESY
0.3 mM [U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
10
3D 1H-13C NOESY aliphatic
0.3 mM [U-100% 13C; U-100% 15N] E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
11
2D 1H-1H NOESY
0.3 mM E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
12
2D 1H-1H NOESY
0.3 mM E6
90% H2O/10% D2O
50 mM NaCl
6.8
ambient
296
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DRX
600
2
Bruker
AVANCE
700
NMR Refinement
Method
Details
Software
simulated annealing
TopSpin
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
200
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
The dimer structures were calculated using Ambiguous Interaction restrains, unambiguous inter-molecular NOE-derived distance restraints and dihedral angles.