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Metal binding domain of rat beta-amyloid
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 100% D2O 10 7.1 ambient 278 2 2D DQF-COSY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 90% H2O/10% D2O 10 7.1 ambient 278 3 2D DQF-COSY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 100% D2O 10 7.1 ambient 278 4 2D 1H-1H NOESY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 90% H2O/10% D2O 10 7.1 ambient 278 5 2D 1H-1H NOESY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 100% D2O 10 7.1 ambient 278 6 2D 1H-1H TOCSY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 100% D2O 10 7.1 ambient 278 7 2D 1H-1H TOCSY 5 mM protein_1, 8 mM Zinc cloride, 20 mM [U-100% 2H] TRIS, 0.1 % sodium azide 90% H2O/10% D2O 10 7.1 ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing, QM/MM geometry optimization simulation in explicit water environment TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 data analysis Anglesearch V. Polshakov 5 structure solution GROMACS 3.3.1 Van Der Spoel et al. 6 geometry optimization GROMACS/CPMD Biswas & Gogonea 7 data analysis ProcheckNMR Laskowski and MacArthur 8 data analysis Insight II Accelrys Software Inc. 9 refinement GROMACS Van Der Spoel et al. 10 refinement GROMACS/CPMD Biswas & Gogonea