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NMR structure of the protein YP_001302112.1 from Parabacteroides Distasonis
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 2 3D 1H-13C NOESY aliphatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 3 3D 1H-13C NOESY aromatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 4 3D 1H-15N NOESY 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 5 5D APSY CBCACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 6 4D APSY HACANH 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298 7 5D APSY HACACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 25 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.18 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA Guntert P. 2 structure solution CYANA Guntert P. 3 collection TopSpin Bruker Biospin 4 data analysis TopSpin Bruker Biospin 5 processing TopSpin Bruker Biospin 6 refinement OPALp Luginbuhl, Guntert, Billeter and Wuthrich 7 peak picking UNIO Unio Herrmann Wuthrich 8 chemical shift assignment UNIO Unio Herrmann Wuthrich