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NMR solution structure of native TdPI-short
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H COSY 1.0 mM TdPI-short 90% H2O/10% D2O 0.1% TFA 2.0 ambient 298 2 2D 1H-1H NOESY 1.0 mM TdPI-short 90% H2O/10% D2O 0.1% TFA 2.0 ambient 298 3 2D 1H-1H TOCSY 1.0 mM TdPI-short 90% H2O/10% D2O 0.1% TFA 2.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics, torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 refinement Amber 9.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm 3 chemical shift assignment NMRView 5.0.20 Johnson, One Moon Scientific 4 data analysis NMRView 5.0.20 Johnson, One Moon Scientific 5 peak picking NMRView 5.0.20 Johnson, One Moon Scientific 6 collection TopSpin 1.3 Bruker Biospin 7 processing TopSpin 1.3 Bruker Biospin 8 refinement CYANA Guntert, Mumenthaler and Wuthrich