2LFD
Solution NMR structure of Diiron protein in presence of 2 eq Zn2+, Northeast Structural Genomics Consortium Target OR21
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
4 | 3D HNCO | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
5 | 3D HNCACB | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
7 | 3D CCH-TOCSY | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
8 | 3D HN(CA)CO | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
9 | (4,3)D HCCH | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
10 | 15N,13C-simNOESY | 0.8 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 | |
11 | 2D 1H-13C HSQC | 0.3 mM [U-10% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 7.8 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | AutoStructure |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | AutoStructure | Huang, Tejero, Powers and Montelione | |
2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | chemical shift assignment | XEASY | Bartels et al. | |
6 | structure solution | PSVS | Bhattacharya and Montelione |