2LDT
The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER) | 90% H2O/10% D2O | 0.05 | 6.4 | ambient | 293 | |
2 | 2D DQF-COSY | 0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER) | 90% H2O/10% D2O | 0.05 | 6.4 | ambient | 293 | |
3 | 2D 1H-15N HSQC | 0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER) | 90% H2O/10% D2O | 0.05 | 6.4 | ambient | 293 | |
4 | 2D 1H-13C HSQC | 0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER) | 90% H2O/10% D2O | 0.05 | 6.4 | ambient | 293 | |
5 | 2D 1H-1H NOESY | 0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER) | 90% H2O/10% D2O | 0.05 | 6.4 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 13 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | refinement | XPLOR-NIH | Schwieters, Kuszewski, Tjandra and Clore |