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Solution NMR Structure of a Protein With a Redesigned Hydrophobic Core, Northeast Structural Genomics Consortium Target OR38
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 2 2D 1H-13C HSQC 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 3 3D HNCO 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 4 3D CBCA(CO)NH 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 5 3D HNCACB 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 6 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 7 3D HBHA(CO)NH 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 8 3D HCCH-TOCSY 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 9 3D HCCH-COSY 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 10 2D 1H-15N HSQC 1.0 mM [U-10% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298 11 3D HN(CA)CO 1.0 mM [U-100% 13C; U-100% 15N] OR38, 100 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 2 Varian INOVA 750
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics, molecular dynamics CARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis CARA 1.8 Keller et al. 2 peak picking CARA 1.8 Keller et al. 3 chemical shift assignment CARA 1.8 Keller et al. 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 9 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 10 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 11 collection VnmrJ Varian 12 chemical shift assignment PINE Bahrami, Markley, Assadi, and Eghbalnia 13 geometry optimization TALOS+ Shen, Cornilescu, Delaglio and Bax 14 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read