2LC8
Solution structure of the MLV readthrough pseudoknot
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.2-2.0 mM RNA (59-MER) | 100% D2O | 0.02 | 7.4 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.2-2.0 mM [U-100% 13C; U-100% 15N] RNA (59-MER) | 100% D2O | 0.02 | 7.4 | ambient | 298 | |
3 | 2D 1H-13C HSQC | 0.2-2.0 mM [U-100% 2H] RNA (59-MER) | 100% D2O | 0.02 | 7.4 | ambient | 298 | |
4 | 2D 1H-1H NOESY | 0.2-2.0 mM RNA (59-MER) | 100% D2O | 0.02 | 7.4 | ambient | 298 | |
5 | 2D 1H-1H NOESY | 0.2-2.0 mM [U-100% 2H] RNA (59-MER) | 100% D2O | 0.02 | 7.4 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |