2LC2
Solution structure of the RXLR effector P. capsici AVR3a4
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1.11 mM [U-100% 13C; U-100% 15N] AVR3a4-1, 20 mM [U-100% 2H] TRIS-2, 300 mM sodium chloride-3, 1 mM [U-100% 2H] DTT-4, 0.02 % sodium azide-5 | 90% H2O/10% D2O | 320 | 7.0 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 1.11 mM [U-100% 13C; U-100% 15N] AVR3a4-1, 20 mM [U-100% 2H] TRIS-2, 300 mM sodium chloride-3, 1 mM [U-100% 2H] DTT-4, 0.02 % sodium azide-5 | 90% H2O/10% D2O | 320 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
2 | collection | TopSpin | 2.1 | Bruker Biospin |
3 | processing | NMRPipe | 20090801 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
5 | data analysis | KUJIRA | 0.9843 | Kobayashi, N. |
6 | refinement | CYANA |