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Glycyl-tRNA(UCC)1B anticodon stem-loop from Staphylococcus epidermidis
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 100% D2O 10 6.2 ambient 298 2 2D 1H-1H COSY 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 100% D2O 10 6.2 ambient 298 3 2D 1H-1H NOESY 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 90% H2O/10% D2O 10 6.2 ambient 298 4 3D 1H-13C NOESY 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 100% D2O 10 6.2 ambient 298 5 3D HCCH-TOCSY 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 100% D2O 10 6.2 ambient 298 6 2D HCN 0.02-0.04 mM RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3') 100% D2O 10 6.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing Felix
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 8 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Felix Accelrys Software Inc. 2 processing Felix Accelrys Software Inc. 3 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore