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Solution structure of chicken ileal BABP in complex with glycochenodeoxycholic acid
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 90% H2O/10% D2O 30 6.5 ambient 298 2 2D 1H-13C HSQC 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 100% D2O 30 6.5 ambient 298 3 2D 1H-1H NOESY 0.4 mM Protein, 1.6 mM GLYCOCHENODEOXYCHOLIC ACID 90% H2O/10% D2O 30 6.5 ambient 298 4 3D HCCH-TOCSY 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 100% D2O 30 6.5 ambient 298 5 3D HCCH-TOCSY 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 100% D2O 30 6.5 ambient 298 6 3D 1H-15N NOESY 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 90% H2O/10% D2O 30 6.5 ambient 298 7 3D 1H-13C NOESY aliphatic 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 90% H2O/10% D2O 30 6.5 ambient 298 8 3D 13C-edited 13C-filtered NOESY 0.8 mM [U-100% 13C; U-100% 15N] Protein, 3.2 mM GLYCOCHENODEOXYCHOLIC ACID 100% D2O 30 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Varian INOVA 800
NMR Refinement Method Details Software molecular dynamics refinement in explicit water NMRView
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRView 8.0.a.30 Johnson, One Moon Scientific 2 collection TopSpin 2.1 Bruker Biospin 3 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 4 structure solution HADDOCK 2.1 Bonvin 5 refinement HADDOCK 2.1 Bonvin