2LAM
Three-dimensional structure of the cyclotide Cter M
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM Cter M | 70% H2O/20%CD3CN/10% D2O | ambient | 4 | 298 | ||
2 | 2D 1H-1H NOESY | 1 mM Cter M | 70% H2O/20%CD3CN/10% D2O | ambient | 4 | 298 | ||
3 | 2D DQF-COSY | 1 mM Cter M | 70% H2O/20%CD3CN/10% D2O | ambient | 4 | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | XEASY | Bartels et al. | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | structure solution | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
5 | refinement | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read |