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Solution structure of INAD PDZ5 complexed with Kon-tiki peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 15N] protein-1, 10 mM DTT-2, 50 mM TRIS-3, 50 mM sodium chloride-4, 1 mM EDTA-5 90% H2O/10% D2O 0.1 7 ambient 303 2 2D 1H-1H NOESY 1 mM protein-16, 10 mM [U-100% 2H] DTT-17, 50 mM [U-100% 2H] TRIS-18, 50 mM sodium chloride-19, 1 mM EDTA-20 100% D2O 0.1 7 ambient 303 3 2D 1H-1H TOCSY 1 mM protein-16, 10 mM [U-100% 2H] DTT-17, 50 mM [U-100% 2H] TRIS-18, 50 mM sodium chloride-19, 1 mM EDTA-20 100% D2O 0.1 7 ambient 303 4 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM DTT-7, 50 mM TRIS-8, 50 mM sodium chloride-9, 1 mM EDTA-10 90% H2O/10% D2O 0.1 7 ambient 303 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM DTT-7, 50 mM TRIS-8, 50 mM sodium chloride-9, 1 mM EDTA-10 90% H2O/10% D2O 0.1 7 ambient 303 6 3D 1H-15N NOESY 1 mM [U-100% 15N] protein-1, 10 mM DTT-2, 50 mM TRIS-3, 50 mM sodium chloride-4, 1 mM EDTA-5 90% H2O/10% D2O 0.1 7 ambient 303 7 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] protein-11, 10 mM [U-100% 2H] DTT-12, 50 mM [U-100% 2H] TRIS-13, 50 mM sodium chloride-14, 1 mM EDTA-15 100% D2O 0.1 7 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 refinement CYANA Guntert, Mumenthaler and Wuthrich 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking PIPP Garrett 5 peak picking Sparky Goddard 6 collection VnmrJ Varian