2L9Y
Solution structure of the MoCVNH-LysM module from the rice blast fungus Magnaporthe oryzae protein (MGG_03307)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
2 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
4 | 3D H(CCO)NH | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
5 | 3D C(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
6 | 3D HCCH-TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
8 | 3D 1H-13C NOESY aliphatic | 0.5 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 | |
9 | 2D 1H-15N HSQC | 0.5 mM [U-100% 15N] protein | 90% H2O/10% D2O | 0.020 | 5.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | the 25 lowest energy structures were further refined using explicit water. | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | 5.2.2_01 | Johnson, One Moon Scientific |
4 | automatic noe assignment | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | structure calculation | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
6 | refinement | CNS |