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Structure/function of the LBR Tudor domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 2 2D 1H-13C HSQC 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 3 3D CBCA(CO)NH 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 4 3D HNCA 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 5 3D HNCACB 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 6 3D HCCH-TOCSY 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 7 3D 1H-15N NOESY 20 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O 0.1 6.9 ambient 298 8 3D 1H-13C NOESY aliphatic 20 mM sodium phosphate, 100 mM sodium chloride 100% D2O 0.1 6.9 ambient 298 9 2D 1H-13C HSQC aromatic 20 mM sodium phosphate, 100 mM sodium chloride 100% D2O 0.1 6.9 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500 2 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics NMRView
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 peak picking NMRView Johnson, One Moon Scientific 2 chemical shift assignment NMRView Johnson, One Moon Scientific 3 data analysis NMRView Johnson, One Moon Scientific 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 dihedral angle restraints TALOS Cornilescu, Delaglio and Bax 6 structure quality analysis ProcheckNMR Laskowski and MacArthur 7 structure quality analysis WHAT IF Vriend 8 molecular images MOLMOL Koradi, Billeter and Wuthrich 9 collection TopSpin Bruker Biospin 10 structure solution CYANA Guntert, Mumenthaler and Wuthrich 11 refinement CYANA