☰ Navigation Tabs
Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 2 3D CBCA(CO)NH 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 3 3D C(CO)NH 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 4 3D HNCO 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 5 3D HNCA 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 6 3D HNCACB 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 7 3D HBHA(CO)NH 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 8 3D HN(CO)CA 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 9 3D H(CCO)NH 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 10 3D 1H-15N NOESY 20mM sodium phosphate-1; 100mM sodium chloride-2; 2mM EDTA-3; 90% H2O/10% D2O 90% H2O/10% D2O 0.140 4.8 ambient 298 11 3D HCCH-TOCSY 20mM sodium phosphate-4; 100mM sodium chloride-5; 2mM EDTA-6; 100% D2O 100% D2O 0.140 4.8 ambient 298 12 3D HCCH-COSY 20mM sodium phosphate-4; 100mM sodium chloride-5; 2mM EDTA-6; 100% D2O 100% D2O 0.140 4.8 ambient 298 13 3D 1H-13C NOESY 20mM sodium phosphate-4; 100mM sodium chloride-5; 2mM EDTA-6; 100% D2O 100% D2O 0.140 4.8 ambient 298 14 2D 1H-1H TOCSY 20mM sodium phosphate-4; 100mM sodium chloride-5; 2mM EDTA-6; 100% D2O 100% D2O 0.140 4.8 ambient 298 15 2D 1H-1H NOESY 20mM sodium phosphate-4; 100mM sodium chloride-5; 2mM EDTA-6; 100% D2O 100% D2O 0.140 4.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DMX 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the averagec)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read