☰ Navigation Tabs
Solution Structure of the R3 Domain of Talin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 15N] Vbs2b-1; 10 % [U-100% 2H] D2O-2; 50 mM sodium chloride-3; 2 mM DTT-4, 20 mM TRIS-5; 90% H2O/10% D2O 90% H2O/10% D2O 50 6.5 ambient 298 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298 3 2D 1H-1H NOESY 1 mM [U-100% 15N] Vbs2b-11, 100 % [U-100% 2H] D2O-12; 50 mM sodium chloride-13; 2 mM DTT-14; 20 mM TRIS-15; 100% D2O 100% D2O 50 6.5 ambient 298 4 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298 5 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298 6 3D HNCA 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298 7 3D 1H-15N NOESY 1 mM [U-100% 15N] Vbs2b-1; 10 % [U-100% 2H] D2O-2; 50 mM sodium chloride-3; 2 mM DTT-4, 20 mM TRIS-5; 90% H2O/10% D2O 90% H2O/10% D2O 50 6.5 ambient 298 8 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298 9 3D HNCO 1 mM [U-100% 13C; U-100% 15N] Vbs2b-6; 10 % [U-100% 2H] D2O-7; 50 mM sodium chloride-8; 2 mM DTT-9; 20 mM TRIS-10 90% H2O/10% D2O 50 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker DRX 800
NMR Refinement Method Details Software simulated annealing, molecular dynamics, torsion angle dynamics FINAL STRUCTURES REFINED IN EXPLICIT WATER BATH AS IMPLEMENTED IN ARIA 1.2/CNS 1.1. 20 LOWEST ENERGY STRUCTURES SELECTED FROM WATER REFINEMENT, CNS, INITIAL STRUCTURES GENERATED WITH CYANA ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 geometry optimization ARIA 1.2 Linge, O'Donoghue and Nilges 2 structure solution ARIA 1.2 Linge, O'Donoghue and Nilges 3 refinement ARIA 1.2 Linge, O'Donoghue and Nilges 4 data analysis CCPNAnalysis 1.15 CCPN 5 chemical shift assignment CCPNAnalysis 1.15 CCPN 6 peak picking CCPNAnalysis 1.15 CCPN 7 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read