2L5R
Conformational and membrane interactins studies of antimicrobial peptide Alyteserin-1C
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 290 mM DHPC | 90% H2O/10% D2O | ambient | 307 | |||
2 | 2D 1H-1H NOESY | 290 mM DHPC | 90% H2O/10% D2O | ambient | 307 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.0 | Bruker Biospin |
2 | processing | TopSpin | 2.0 | Bruker Biospin |
3 | data analysis | TopSpin | 2.0 | Bruker Biospin |
4 | peak picking | Sparky | 3.114 | Goddard |
5 | chemical shift assignment | Sparky | 3.114 | Goddard |
6 | structure solution | CYANA | 2.0 | Guntert, Mumenthaler and Wuthrich |
7 | refinement | SYBYL | 6.8.1 | Tripos |