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Solution structure of the transmembrane domain of Bcl-2 member Harakiri in micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol 95% H2O/5% D2O 0.2 3.2 ambient 323 2 2D 1H-1H NOESY 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol 95% H2O/5% D2O 0.2 3.2 ambient 323 3 2D 1H-13C HSQC 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 0.1 mM sodium azide, 5 mM D15 TCEP, 35% v/v D4 methanol 100% D2O 0.2 3.2 ambient 323 4 2D 1H-1H COSY 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol 95% H2O/5% D2O 0.2 3.2 ambient 323
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis PIPP Garrett 4 data analysis Sparky Goddard 5 data analysis TALOS Cornilescu, Delaglio and Bax 6 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore