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Solution NMR structure of ubiquitin-binding motif (UBM2) of human polymerase iota
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 3 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 4 3D C(CO)NH 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 6 3D H(CCO)NH 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 7 3D HBHA(CO)NH 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 8 3D HNCO 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 9 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 10 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298 11 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] UBM2 90% H2O/10% D2O 0.18 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 data analysis NMRView Johnson, One Moon Scientific 4 data analysis SANE Duggan, Legge, Dyson & Wright 5 refinement Amber 8 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm