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Solution NMR structure of zinc finger domain of E3 ubiquitin-protein ligase praja-1 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) target HR4710B
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 2 2D 1H-13C HSQC 0.82 mM [U-10% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 3 3D 1H-13C-15N SIMUTANEOUS NOESY 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 4 3D 1H-13C aromatic NOESY 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 5 3D HNCACB 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 6 3D CBCA(CO)NH 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 7 3D C(CO)NH 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 8 3D HNCO 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 9 3D HCCH-TOCSY 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298 10 3D HBHA(CO)NH 0.94 mM [U-100% 13C; U-100% 15N] pja1 zinc finger domain 90% H2O/10% D2O n.a. 7.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA Guntert, Mumenthaler and Wuthrich 7 refinement AutoStructure Huang, Tejero, Powers and Montelione 8 geometry optimization AutoStructure Huang, Tejero, Powers and Montelione 9 data analysis AutoStructure Huang, Tejero, Powers and Montelione 10 data analysis TALOS+ Shen, Delaglio and Bax 11 data analysis XEASY Bartels et al. 12 peak picking XEASY Bartels et al. 13 refinement XEASY Bartels et al. 14 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 15 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 16 collection VnmrJ Varian 17 collection TopSpin Bruker Biospin