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Hybrid solution and solid-state NMR structure ensemble of phospholamban pentamer
SOLUTION NMR - SOLID-STATE NMR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 50 mM beta-mercaptoethanol-1, 5 % D2O-2, 0.02 % sodium azide-3, 300 mM DPC-4, 20 mM sodium phosphate-5, 120 mM sodium chloride-6 95% H2O/5% D2O 150 6.0 ambient 310 2 3D 1H-15N NOESY 50 mM beta-mercaptoethanol-1, 5 % D2O-2, 0.02 % sodium azide-3, 300 mM DPC-4, 20 mM sodium phosphate-5, 120 mM sodium chloride-6 95% H2O/5% D2O 150 6.0 ambient 310 3 2D 1H-13C HSQC 50 mM beta-mercaptoethanol-1, 5 % D2O-2, 0.02 % sodium azide-3, 300 mM DPC-4, 20 mM sodium phosphate-5, 120 mM sodium chloride-6 95% H2O/5% D2O 150 6.0 ambient 310 4 PISEMA 40 uM DOPC-7, 11 uM DOPE-8, 5 mM DTT-9 100% H2O 278 5 SAMPI4 40 uM DOPC-7, 11 uM DOPE-8, 5 mM DTT-9 100% H2O 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VXRS 600 2 Bruker ARX 600 3 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with acceptable covalent geometry Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.23 Schwieters, Kuszewski, Tjandra and Clore 2 data analysis MOLMOL Koradi, Billeter and Wuthrich 3 data analysis Procheck Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 peak picking NMRView Johnson, One Moon Scientific 6 data analysis TALOS Cornilescu, Delaglio and Bax 7 refinement X-PLOR NIH 2.23 Schwieters, Kuszewski, Tjandra and Clore