2KXV
NMR structure and calcium-binding properties of the tellurite resistance protein TerD from Klebsiella pneumoniae
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
2 | 2D 1H-13C HSQC | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
3 | 3D CBCA(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
4 | 3D HNCACB | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
5 | 3D HNCO | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
6 | 3D HN(CO)CA | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
7 | 3D C(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
8 | 3D 1H-15N NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
9 | 3D 1H-13C NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
10 | 3D HCCH-TOCSY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
11 | 3D HBHA(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
12 | 3D HNHA | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
13 | 2D 1H-1H NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | AURELIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | AURELIA | 3.1.6 | Linge, O'Donoghue and Nilges |
2 | processing | XwinNMR | 3.5 | Bruker Biospin |
3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | chemical shift assignment | VNMR | 5.0 | Johnson, One Moon Scientific |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |