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Solution structures of the double PHD fingers of human transcriptional protein DPF3b bound to a H3 peptide wild type
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 100 mM potassium phosphate, 2 mM DTT 100% D2O 6.5 ambient 298 2 3D 1H-13C NOESY 100 mM potassium phosphate, 2 mM DTT 100% D2O 6.5 ambient 298 3 3D_13C-Edited_13C/15N-filtered NOEST 100 mM potassium phosphate, 2 mM DTT 100% D2O 6.5 ambient 298 4 3D HNCACB 100 mM potassium phosphate, 2 mM DTT 100% D2O 6.5 ambient 298 5 3D HN(COCA)CB 100 mM potassium phosphate, 2 mM DTT 100% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 800 3 Bruker AVANCE 600 4 Bruker DRX 500
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing, torsion angle dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structures were determined using triple-resonance NMR spectroscopy
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA 2.2 Linge, O'Donoghue and Nilges 2 processing NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView 5.04 Johnson, One Moon Scientific 4 structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read