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Tetrapeptide KWKK conjugated to oligonucleotide duplex by a trimethylene tether
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.8 mM DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')-1, 0.8 mM DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3')-2, 0.8 mM entity_3-3 100% D2O 100 5.3 ambient 298 2 2D 1H-1H COSY 0.8 mM DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')-1, 0.8 mM DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3')-2, 0.8 mM entity_3-3 100% D2O 100 5.3 ambient 298 3 2D 1H-1H TOCSY 0.8 mM DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')-1, 0.8 mM DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3')-2, 0.8 mM entity_3-3 100% D2O 100 5.3 ambient 298 4 2D DQF-COSY 0.8 mM DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')-1, 0.8 mM DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3')-2, 0.8 mM entity_3-3 100% D2O 100 5.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum Conformers Calculated Total Number 10 Conformers Submitted Total Number 1 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 7.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm