2KUW
Solution Structure of K10 TLS RNA (A-form mutant in lower helix)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.6 mM RNA (48-MER)-1 | 95% H2O/5% D2O | 0.01 | 6.0 | ambient | 298 | |
2 | 2D 1H-1H NOESY | 0.6 mM RNA (48-MER)-2 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
3 | 2D 1H-1H TOCSY | 0.6 mM RNA (48-MER)-2 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
4 | 2D DQF-COSY | 0.6 mM RNA (48-MER)-2 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
5 | 2D HP COSY | 0.6 mM RNA (48-MER)-2 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
6 | 2D HNN COSY | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-3 | 95% H2O/5% D2O | 0.01 | 6.0 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
8 | 3D HCCH-COSY | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
9 | 3D 13C NOESY-HSQC | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
10 | 3D HCP | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
11 | 3D 13C HMQC TOCSY | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 | |
12 | 2D 13C CT-TROSY | 0.8 mM [U-99% 13C; U-99% 15N] RNA (48-MER)-4 | 100% D2O | 0.01 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, restrained molecular dynamics with RDCs | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE, MULTIDIMENSIONAL NMR SPECTROSCOPY AND TROSY-TYPE EXPERIMENTS TO MEASURE RESIDUAL DIPOLAR COUPLINGS |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | peak picking | Sparky | Goddard | |
4 | chemical shift assignment | Sparky | Goddard | |
5 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |