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Solution structure of MLL1 PHD3-Cyp33 RRM chimeric protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 2 2D 1H-13C HSQC 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 3 3D HNCACB 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 4 3D CBCA(CO)NH 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 5 3D HBHA(CO)NH 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 6 3D HCCH-TOCSY 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 7 3D 15N-edited 1H-1H NOESY 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 8 3D 13C-edited 1H-1H NOESY 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2 9 3D HNCO 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS 93% H2O/7% D2O 50 7.0 ambient 298.2
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing, molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, F. et al. 3 data analysis Sparky Goddard, T. et al. 4 peak picking Sparky Goddard, T. et al. 5 structure solution CYANA Guntert, P. et al. 6 structure solution X-PLOR NIH Schwieters, C. et al. 7 refinement X-PLOR NIH Schwieters, C. et al.