2KU3
Solution structure of BRD1 PHD1 finger
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
2 | 3D CBCA(CO)NH | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
3 | 3D HNCACB | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
4 | 3D HNCO | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
5 | 3D HBHA(CO)NH | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
6 | 3D C(CO)NH | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
7 | 3D H(CCO)NH | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
8 | 3D 1H-15N NOESY | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 150mM sodium chloride; 20mM Bis-Tris; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.15 | 6.7 | ambient | 293 | |
9 | 3D 1H-13C NOESY | 2mM ZINC ION; 1mM [U-100% 13C; U-100% 15N] protein; 20mM Bis-Tris; 150mM sodium chloride; 100% D2O | 100% D2O | 0.15 | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.2 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
2 | chemical shift assignment | Sparky | 3 | Goddard |
3 | data analysis | Sparky | 3 | Goddard |
4 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
5 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
6 | processing | TALOS | Cornilescu, Delaglio and Bax | |
7 | data analysis | MOLMOL | 2K.2 | Koradi, Billeter and Wuthrich |