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Solution NMR Structure of Probable 30S Ribosomal Protein PSRP-3 (Ycf65-like protein) from Synechocystis sp. (strain PCC 6803), Northeast Structural Genomics Consortium Target Target SgR46
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293 2 2D 1H-13C HSQC 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293 3 3D HNCO 0.3 mM [U-100% 13C; U-100% 15N] SgR46-3 95% H2O/5% D2O 4.5 ambient 293 4 3D CBCA(CO)NH 0.3 mM [U-100% 13C; U-100% 15N] SgR46-3 95% H2O/5% D2O 4.5 ambient 293 5 3D HNCACB 0.3 mM [U-100% 13C; U-100% 15N] SgR46-3 95% H2O/5% D2O 4.5 ambient 293 6 3D 1H-13C arom NOESY 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293 7 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293 8 2D 1H-13C HSQC 0.8 mM [U-10% 13C; U-100% 15N] SgR46-2 95% H2O/5% D2O 7.5 ambient 293 9 2D 1H-15N HSQC 0.3 mM [U-100% 13C; U-100% 15N] SgR46-3 95% H2O/5% D2O 4.5 ambient 293 10 3D HCCH-TOCSY 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293 11 3D HNCA 1.1 mM [U-100% 13C; U-100% 15N] SgR46-1 95% H2O/5% D2O 7.5 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing, distance geometry, molecular dynamics CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 9 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 10 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 11 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 data analysis,peak picking,chemical shift assignment XEASY Bartels et al. 13 collection TopSpin Bruker Biospin 14 collection VnmrJ Varian