Structure and Dynamics of the Membrane-bound form of Pf1 Coat Protein: Implications for Structural Rearrangement During Virus Assembly
SOLUTION NMR - SOLID-STATE NMR
NMR Experiment |
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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1 | 1D 15N, 2D 1H-15N SLF | 5 mM [U-98% 15N] protein | 100% H2O | | 6.7 | ambient | 313 | |
2 | 1D 15N | 5 mM [U-98% 15N] protein | 100% H2O | | 6.7 | ambient | 295 | |
3 | 2D 1H-15N HSQC | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | | 6.7 | ambient | 313 | |
4 | 3D HNCA | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | | 6.7 | ambient | 313 | |
5 | 2D 1H-15N IPAP | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | | 6.7 | ambient | 313 | |
6 | 3D 1H-15N NOESY | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | | 6.7 | ambient | 313 | |
NMR Spectrometer Information |
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Spectrometer | Manufacturer | Model | Field Strength |
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1 | Bruker | AVANCE | 750 |
2 | Bruker | AVANCE | 500 |
3 | Bruker | DRX | 600 |
4 | Bruker | AVANCE | 700 |
NMR Refinement |
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Method | Details | Software |
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simulated annealing | | X-PLOR NIH |
NMR Ensemble Information |
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Conformer Selection Criteria | structures with the lowest energy |
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Conformers Calculated Total Number | 50 |
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Conformers Submitted Total Number | 10 |
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Representative Model | 1 (lowest energy) |
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Computation: NMR Software |
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# | Classification | Version | Software Name | Author |
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1 | structure solution | X-PLOR NIH | | Schwieters, Kuszewski, Tjandra and Clore |
2 | refinement | X-PLOR NIH | | Schwieters, Kuszewski, Tjandra and Clore |