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Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding module from LDLR determined with Haddock
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6 90% H2O/10% D2O 25 7.0 ambient 298 2 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3 90% H2O/10% D2O 25 7.0 ambient 298 3 3D HNCA 600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6 90% H2O/10% D2O 25 7.0 ambient 298 4 3D HNCACB 600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6 90% H2O/10% D2O 25 7.0 ambient 298 5 3D HN(CO)CA 600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6 90% H2O/10% D2O 25 7.0 ambient 298 6 3D HNCA 1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3 90% H2O/10% D2O 25 7.0 ambient 298 7 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3 90% H2O/10% D2O 25 7.0 ambient 298 8 3D HN(CO)CA 1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3 90% H2O/10% D2O 25 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITY 500
NMR Refinement Method Details Software simulated annealing Gifa
NMR Ensemble Information Conformer Selection Criteria lowest haddock score Conformers Calculated Total Number 200 Conformers Submitted Total Number 1 Representative Model 1 (lowest haddock score)
Computation: NMR Software # Classification Version Software Name Author 1 processing Gifa 4.3 Delsuc 2 data analysis Gifa 4.3 Delsuc 3 collection VNMR Varian 4 structure solution HADDOCK 2.0 Bonvin 5 data analysis xcrvfit 4.0.12 Robert Boyko, Brian Sykes 6 refinement HADDOCK 2.0 Bonvin