2KR7

solution structure of Helicobacter pylori SlyD


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
22D 1H-13C HSQC1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2100% D2O0.16.8ambient298
33D CBCA(CO)NH1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
43D HNCACB1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
53D HNCO1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
63D HN(CA)CO1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
73D C(CO)NH1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
83D H(CCO)NH1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
93D HNCA1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
103D HCCH-TOCSY1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2100% D2O0.16.8ambient298
113D HCCH-COSY1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2100% D2O0.16.8ambient298
123D HBHA(CO)NH1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
133D HNHA1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
143D HN(CO)CA1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
153D 1H-15N NOESY1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-190% H2O/10% D2O0.16.8ambient298
163D 1H-13C NOESY1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2100% D2O0.16.8ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
molecular dynamics, simulated annealingCYANA,_AMBER
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA,_AMBERGuntert, Mumenthaler and Wuthrich
2refinementCYANA,_AMBERGuntert, Mumenthaler and Wuthrich
3structure solutionCYANA,_AMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
4refinementCYANA,_AMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm