2KPZ

Human NEDD4 3RD WW Domain Complex with The Human T-cell Leukemia virus 1 GAG-Pro poliprotein Derived Peptide SDPQIPPPYVEP


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
22D 1H-1H TOCSY1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
32D 1H-1H NOESY1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
43D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
53D HNCACB1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
63D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
73D 1H-15N NOESY1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
83D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
93D 1H-15N TOCSY1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O90% H2O/10% D2O7.00ambient288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingCNSSOLVE
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number120
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNSSOLVEBrunger, Adams, Clore, Gros, Nilges and Read
2refinementCNSSOLVEBrunger, Adams, Clore, Gros, Nilges and Read
3chemical shift assignmentXEASYBartels et al.
4peak pickingXEASYBartels et al.
5data analysisXEASYBartels et al.
6processingTopSpinBruker Biospin
7processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax