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Solution NMR Structure of protein yutD from B.subtilis, Northeast Structural Genomics Consortium Target SR232
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 2 2D 1H-13C HSQC 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 3 3D HNCO 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 4 3D CBCA(CO)NH 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 5 3D HNCACB 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 6 3D 1H-13C arom NOESY 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298 7 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 1.1 mM [U-100% 13C; U-100% 15N] SR232 95% H2O/5% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics, null CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 9 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 10 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 11 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 data analysis XEASY Bartels et al. 13 peak picking XEASY Bartels et al. 14 chemical shift assignment XEASY Bartels et al. 15 collection TopSpin Bruker Biospin 16 collection VnmrJ Varian